Egor Y Dolzhenko

US Patent:

20230019053, Jan 19, 2023

Filed:

Jun 13, 2022

Appl. No.:

17/839075

Inventors:

- San Diego CA, US
Egor Dolzhenko - San Diego CA, US
Michael A. Eberle - San Diego CA, US

International Classification:

G16B 30/00
G16B 20/10
G16B 40/00

Abstract:

Disclosed herein include systems, devices, and methods for determining a variable number tandem repeat (VNTR) status. Haplotypes of a VNTR can be determined using long sequence reads of reference samples aligned to the VNTR in a reference. Short reads of a test sample of a test subject can be aligned to the haplotypes determined using the long sequence reads to determine a VNTR status (e.g., one or more haplotypes or a genotype of the test subject) of the test subject based on the probability indications of the haplotypes.